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alamut visual software v 2 6 1  (Sophia Genetics)


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    Structured Review

    Sophia Genetics alamut visual software v 2 6 1
    Alamut Visual Software V 2 6 1, supplied by Sophia Genetics, used in various techniques. Bioz Stars score: 97/100, based on 1558 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/plus+software+v+1+6+1/Alamut+Visual+Plus/pm36535754-26-7-7
    Average 97 stars, based on 1558 article reviews
    alamut visual software v 2 6 1 - by Bioz Stars, 2026-09
    97/100 stars

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    Related Articles

    Software:

    Article Title: Analysis of 200 unrelated individuals with a constitutional NF1 deep intronic pathogenic variant reveals that variants flanking the alternatively spliced NF1 exon 31 [23a] cause a classical neurofibromatosis type 1 phenotype while altering predominantly NF1 isoform type II
    Article Snippet: The variant NM_001042492.2:c.4174-679G > A ( a tgagatccttttttctttt AG gtccccaaga) does not alter the predicted strength of this acceptor site, however the branch point prediction integrated in Alamut Visual PlusTM software v.1.6.1 predicts that c.4174-679G > A creates a strong branch point (score of 96.44).

    Article Title: Analysis of 200 unrelated individuals with a constitutional NF1 deep intronic pathogenic variant reveals that variants flanking the alternatively spliced NF1 exon 31 [23a] cause a classical neurofibromatosis type 1 phenotype while altering predominantly NF1 isoform type II.
    Article Snippet: The variant NM_001042492.2:c.4174-679G > A (atgagatccttttttcttttAGgtccccaaga) does not alter the predicted strength of this acceptor site, however the branch point prediction integrated in Alamut Visual PlusTM software v.1.6.1 predicts that c.4174-679G > A creates a strong branch point (score of 96.44).

    Article Title: Analysis of 200 unrelated individuals with a constitutional NF1 deep intronic pathogenic variant reveals that variants flanking the alternatively spliced NF1 exon 31 [23a] cause a classical neurofibromatosis type 1 phenotype while altering predominantly NF1 isoform type II
    Article Snippet: In addition, the new branch points created by deep intronic variants were evaluated with the branch point prediction tool integrated in Alamut Visual PlusTM software v.1.6.1 based on the matrices described by Zhang ( ).

    Article Title: Analysis of 200 unrelated individuals with a constitutional NF1 deep intronic pathogenic variant reveals that variants flanking the alternatively spliced NF1 exon 31 [23a] cause a classical neurofibromatosis type 1 phenotype while altering predominantly NF1 isoform type II
    Article Snippet: Namely, we evaluated the strength of all the wild-type splice sites, the de novo splice sites created by the variants and the cryptic splices sites activated by these variants using the following in-silico splicing predictions programs, i.e. NNSplice (v.0.9), MaxEntScan, SpliceSiteFinder-like and GeneSplicer, all embedded in Alamut Visual PlusTM software v.1.6.1 (SOPHiA GENETICSTM) and SpliceAI.

    Article Title: Analysis of 200 unrelated individuals with a constitutional NF1 deep intronic pathogenic variant reveals that variants flanking the alternatively spliced NF1 exon 31 [23a] cause a classical neurofibromatosis type 1 phenotype while altering predominantly NF1 isoform type II.
    Article Snippet: In addition, the new branch points created by deep intronic variants were evaluated with the branch point prediction tool integrated in Alamut Visual PlusTM software v.1.6.1 based on the matrices described by Zhang (1998).

    Article Title: Analysis of 200 unrelated individuals with a constitutional NF1 deep intronic pathogenic variant reveals that variants flanking the alternatively spliced NF1 exon 31 [23a] cause a classical neurofibromatosis type 1 phenotype while altering predominantly NF1 isoform type II.
    Article Snippet: Namely, we evaluated the strength of all the wild-type splice sites, the de novo splice sites created by the variants and the cryptic splices sites activated by these variants using the following in-silico splicing predictions programs, i.e. NNSplice (v.0.9), MaxEntScan, SpliceSiteFinder-like and GeneSplicer, all embedded in Alamut Visual PlusTM software v.1.6.1 (SOPHiA GENETICSTM) and SpliceAI.

    Variant Assay:

    Article Title: Analysis of 200 unrelated individuals with a constitutional NF1 deep intronic pathogenic variant reveals that variants flanking the alternatively spliced NF1 exon 31 [23a] cause a classical neurofibromatosis type 1 phenotype while altering predominantly NF1 isoform type II
    Article Snippet: The variant NM_001042492.2:c.4174-679G > A ( a tgagatccttttttctttt AG gtccccaaga) does not alter the predicted strength of this acceptor site, however the branch point prediction integrated in Alamut Visual PlusTM software v.1.6.1 predicts that c.4174-679G > A creates a strong branch point (score of 96.44).

    Article Title: Analysis of 200 unrelated individuals with a constitutional NF1 deep intronic pathogenic variant reveals that variants flanking the alternatively spliced NF1 exon 31 [23a] cause a classical neurofibromatosis type 1 phenotype while altering predominantly NF1 isoform type II.
    Article Snippet: The variant NM_001042492.2:c.4174-679G > A (atgagatccttttttcttttAGgtccccaaga) does not alter the predicted strength of this acceptor site, however the branch point prediction integrated in Alamut Visual PlusTM software v.1.6.1 predicts that c.4174-679G > A creates a strong branch point (score of 96.44).

    Article Title: Analysis of 200 unrelated individuals with a constitutional NF1 deep intronic pathogenic variant reveals that variants flanking the alternatively spliced NF1 exon 31 [23a] cause a classical neurofibromatosis type 1 phenotype while altering predominantly NF1 isoform type II
    Article Snippet: In addition, the new branch points created by deep intronic variants were evaluated with the branch point prediction tool integrated in Alamut Visual PlusTM software v.1.6.1 based on the matrices described by Zhang ( ).

    Article Title: Analysis of 200 unrelated individuals with a constitutional NF1 deep intronic pathogenic variant reveals that variants flanking the alternatively spliced NF1 exon 31 [23a] cause a classical neurofibromatosis type 1 phenotype while altering predominantly NF1 isoform type II
    Article Snippet: Namely, we evaluated the strength of all the wild-type splice sites, the de novo splice sites created by the variants and the cryptic splices sites activated by these variants using the following in-silico splicing predictions programs, i.e. NNSplice (v.0.9), MaxEntScan, SpliceSiteFinder-like and GeneSplicer, all embedded in Alamut Visual PlusTM software v.1.6.1 (SOPHiA GENETICSTM) and SpliceAI.

    Article Title: Analysis of 200 unrelated individuals with a constitutional NF1 deep intronic pathogenic variant reveals that variants flanking the alternatively spliced NF1 exon 31 [23a] cause a classical neurofibromatosis type 1 phenotype while altering predominantly NF1 isoform type II.
    Article Snippet: In addition, the new branch points created by deep intronic variants were evaluated with the branch point prediction tool integrated in Alamut Visual PlusTM software v.1.6.1 based on the matrices described by Zhang (1998).

    Article Title: Analysis of 200 unrelated individuals with a constitutional NF1 deep intronic pathogenic variant reveals that variants flanking the alternatively spliced NF1 exon 31 [23a] cause a classical neurofibromatosis type 1 phenotype while altering predominantly NF1 isoform type II.
    Article Snippet: Namely, we evaluated the strength of all the wild-type splice sites, the de novo splice sites created by the variants and the cryptic splices sites activated by these variants using the following in-silico splicing predictions programs, i.e. NNSplice (v.0.9), MaxEntScan, SpliceSiteFinder-like and GeneSplicer, all embedded in Alamut Visual PlusTM software v.1.6.1 (SOPHiA GENETICSTM) and SpliceAI.



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